List of cell types and regions assayed

Cell types and regions assayed	Abbreviations used *
Cone cells	RetC.Cones
Rod cells	RetR.Rods
Hypothalamus	Hyp
Hypocretinergic neurons of hypothalamus	Hyp.Hcrt
Basal forebrain	BF
Cholinergic neurons of basal forebrain	BF.Chat
Brain stem	BS
Cholinergic neurons of brain stem	BS.Chat
Serotonergic neurons of brain stem	Bs.Slc6a4
Cerebellum	Cb
Bergman glia and mature oligodendrocytes of cerebellum	Cb.Septin4
Purkinje cells of cerebellum	Cb.Pcp2
Granule cells of cerebellum	Cb.Neurod1
Stellate and basket cells of cerebellum	Cb.Lypd6
Unipolar brush cells and Bergman glia of cerebellum	Cb.Grp
Golgi neurons of cerebellum	Cb.Grm2
Astroglia of cerebellum	Cb.Fthfd
Myelinating Oligodendrocyte of cerebellum	Cb.Cnp
Striatum(Caudate and Putamen)	Cpu
Drd2+ medium spiny neurons of striatum	Cpu.D2
Drd1+ medium spiny neurons of striatum	Cpu.D1
Cholinergic neurons of striatum	Cpu.Chat
Cortex	Ctx
Oligodendrocyte Progenitor Cells of cortex	Ctx.Pdgfrajd340
Immune Cells*	Ctx.Etv1_ts88
Pnoc+ neurons of cortex	Ctx.Pnoc
Ntsr+ neurons of cortex	Ctx.Ntsr
Glt25d2 neurons of cortex	Ctx.Glt25d2
Astrocytes of cortex	Ctx.Fthfd
Cort+ neurons of cortex	Ctx.Cort
Myelinating Oligodendrocyte of cortex	Ctx.Cnp
Habenula (epithalamus)	Epi
Cholinergic neurons of habenula	Epi.Chat
Spinal cord	Spc
Cholinergic neurons of spinal cord	Spc.Chat

*This line was generated to target Layer 5a Corticostriatal interneurons, but gene expression analysis revealed substantial contamination with lymphoid cell data.

Additional Information about these mouse lines and cell types can be found in the following references:

Doyle, J.P. et al. Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell 135, 749-62 (2008).

Dougherty, J.D. et al. Candidate Pathways for Promoting Differentiation or Quiescence of Oligodendrocyte Progenitor-like Cells in Glioma. Cancer research 72, 4856-68 (2012).